Bioinformatician with interest in antimicrobial resistance surveillance and teaching
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Are you passionate about bioinformatics and with an interest in antimicrobial resistance and impacting public health? Then you might be our new colleague in the National Reference Laboratory for Antimicrobial Resistance at Statens Serum Institut.
About us
We are currently looking for a bioinformatician to analyse and report our WGS based surveillance results from antimicrobial resistant microorganisms to the Regional Hospitals and to develop pipelines to assist in our task of microbial surveillance and research in public health. The position mainly includes work related to some of the major antimicrobial resistant pathogens conferring infections in hospitals.
The position is located in the National Reference Laboratory for Antimicrobial Resistance (NRL-AMR) as part of the Department for Bacteria, Parasites and Fungi. The NRL-AMR purposes include monitoring of bacterial infections in humans, monitoring of antibiotic resistance in bacteria and providing specialized diagnostic testing. Furthermore, planning and execution of training in bioinformatics related to NRL-AMR functions is a major task of our laboratory, due to ongoing trainings of European colleagues under contracts with European Center for Disease Control and prevention (ECDC) and the European commission. The department consists of multiple specialties: bioinformaticians, data scientists, software developers, epidemiologists, medical doctors, veterinarians, microbiologists, molecular biologists and laboratory technicians.
About the position
Your main responsibilities will include supporting bioinformatics expertise to the surveillance of antimicrobial resistant microorganisms, as well as develop and conduct bioinformatic teaching.
You will primarily perform typing of bacteria from whole genome sequencing (WGS) data, as well as develop and maintain our custom scripts, our in-house pipelines, as well as handling of databases. In addition, you will be working with various software tools to support the microbiological antimicrobial resistance surveillance tasks and convey observations to the regional hospitals.
Lastly, you will take part in develop training material as well as conduct training in workshops and courses for international academic staff.
Education, experience and personal qualifications
You have a master's degree in Bioinformatics and experience working with bioinformatics. Ideally, you will master most of the points below (in prioritized order):
You are passionate about good software practices, including documentation, and keen to do some system administration and user support tasks. Bioinformatics pipelining experience is a bonus and well as familiarity with WGS (Illumina and nanopore).
You are good at identifying issues and proposing solutions, and enjoy learning new skills as part of your job. Furthermore, you have strong communication skills.
We offer
Inspiring colleagues and flexible working conditions. You will work with various scientific disciplines in close collaboration with medical experts in an inspiring workplace. You will be a part of an institute offering flexible working conditions and the opportunity to work with pressing issues as part of a modern public health system.
We are a family friendly workplace with a 37-hour working week incl. lunch break. In addition to this, we have an active sports association (IK-SERA) with exercise rooms, a staff association and an affiliated kindergarten. We are located in Copenhagen with good public transport options (bus and metro).
Terms of employment
The employment will be in accordance with the terms of the current agreement between the Danish Ministry of Tax and Organization of Academics.
The position is limited to 2 years.
Are you interested?
For further information about the positions, please contact Head of Section; Anders Rhod Larsen for more information +45 3268 8674.
Application
Send your application with your CV, proof of education electronically. Click “apply” to send your job application.
We expect to complete the interviews around week 44- 45.
Kilde: Jobnet.dk
About us
We are currently looking for a bioinformatician to analyse and report our WGS based surveillance results from antimicrobial resistant microorganisms to the Regional Hospitals and to develop pipelines to assist in our task of microbial surveillance and research in public health. The position mainly includes work related to some of the major antimicrobial resistant pathogens conferring infections in hospitals.
The position is located in the National Reference Laboratory for Antimicrobial Resistance (NRL-AMR) as part of the Department for Bacteria, Parasites and Fungi. The NRL-AMR purposes include monitoring of bacterial infections in humans, monitoring of antibiotic resistance in bacteria and providing specialized diagnostic testing. Furthermore, planning and execution of training in bioinformatics related to NRL-AMR functions is a major task of our laboratory, due to ongoing trainings of European colleagues under contracts with European Center for Disease Control and prevention (ECDC) and the European commission. The department consists of multiple specialties: bioinformaticians, data scientists, software developers, epidemiologists, medical doctors, veterinarians, microbiologists, molecular biologists and laboratory technicians.
About the position
Your main responsibilities will include supporting bioinformatics expertise to the surveillance of antimicrobial resistant microorganisms, as well as develop and conduct bioinformatic teaching.
You will primarily perform typing of bacteria from whole genome sequencing (WGS) data, as well as develop and maintain our custom scripts, our in-house pipelines, as well as handling of databases. In addition, you will be working with various software tools to support the microbiological antimicrobial resistance surveillance tasks and convey observations to the regional hospitals.
Lastly, you will take part in develop training material as well as conduct training in workshops and courses for international academic staff.
Education, experience and personal qualifications
You have a master's degree in Bioinformatics and experience working with bioinformatics. Ideally, you will master most of the points below (in prioritized order):
- Expertise in using Unix, Python, and R
- Expertise in performing bacteriological typing from whole genome sequence data using bioinformatic tools
- Experience with developing and maintaining pipelines
- Knowledge of SQL database structures as well as working with Microsoft Access
- Knowledge within the field of microorganisms and antimicrobial resistance (AMR)
- Experience with conveying knowledge through bioinformatic workshops and course activities for academic staff.
You are passionate about good software practices, including documentation, and keen to do some system administration and user support tasks. Bioinformatics pipelining experience is a bonus and well as familiarity with WGS (Illumina and nanopore).
You are good at identifying issues and proposing solutions, and enjoy learning new skills as part of your job. Furthermore, you have strong communication skills.
We offer
Inspiring colleagues and flexible working conditions. You will work with various scientific disciplines in close collaboration with medical experts in an inspiring workplace. You will be a part of an institute offering flexible working conditions and the opportunity to work with pressing issues as part of a modern public health system.
We are a family friendly workplace with a 37-hour working week incl. lunch break. In addition to this, we have an active sports association (IK-SERA) with exercise rooms, a staff association and an affiliated kindergarten. We are located in Copenhagen with good public transport options (bus and metro).
Terms of employment
The employment will be in accordance with the terms of the current agreement between the Danish Ministry of Tax and Organization of Academics.
The position is limited to 2 years.
Are you interested?
For further information about the positions, please contact Head of Section; Anders Rhod Larsen for more information +45 3268 8674.
Application
Send your application with your CV, proof of education electronically. Click “apply” to send your job application.
We expect to complete the interviews around week 44- 45.
Kilde: Jobnet.dk
Information og data
Denne ledige stilling har jobtypen "Øvrige", og befinder sig i kategorien "Øvrige stillinger".
Arbejdsstedet er beliggende i København S.
Jobbet er oprettet på vores service den 19.10.2023, men kan have været deaktiveret og genaktiveret igen.
Dagligt opdateret: Dette job opdateres dagligt ud fra jobudbyderens hjemmeside via vores søgemaskineteknologi og er aktivt lige nu.
- Øvrige
- København S
- Onsdag den 01. november 2023
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